IGVFFI0168XJLS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7886HWSY(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X015_G3_P013_L001_I1

md5sum

e0147ba11cf07e6985ecf77a47fd9a83

Content MD5sum

8e5efdebd731dddcc69253cfa0493108

File Size

1.9 GB

Submitted File Name

Multiome_ATAC_X015_G3_L003_P013_S9_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

268562696

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9749BFVC

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) posterior cingulate gyrus tissue; Homo sapiens (male, 90 or above years) substantia nigra tissue; ... and 10 more samples