IGVFFI0165CERI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6536JZLW(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP003_G1_P053_L001_R1

md5sum

0ee1b11e419733aa5104184eb213b98a

Content MD5sum

065cbe228a0a9b9b6fe1bb08fbded3ef

File Size

1.3 GB

Submitted File Name

Multiome_ATAC_RP003_G1_L001_P053_S1_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

42333821

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1185QWRL

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 81 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples