IGVFFI0164AITM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8544KWZX(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP028_G6_P077_L005_R2

md5sum

412314d5fbd113544c90c55637f472cd

Content MD5sum

defd36be2eac7a328f7898983509d424

File Size

964 MB

Submitted File Name

Multiome_ATAC_RP028_G6_L006_P077_S24_L005_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

22F3GTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

56931526

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5440WCSX

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 84 years) substantia nigra tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 70 years) substantia nigra tissue associated with Alzheimer disease, Parkinson's disease; ... and 6 more samples