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IGVFFI0150KOPI

released
validated
File Set
IGVFDS0470ONXA(lipid-conjugated oligo sequencing for single-nucleus ATAC-seq (10x multiome with MULTI-seq), single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp3_multi_10x4_NGS1_r1
md5sum
d898ae79973ee2140d9923070b5b160f
Content MD5sum
f1db0808ccf48e86254f20c2626859f7
File Size
555 MB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230522_IGVF3_McGinnis/MULTI/FASTQ/MULTI_4_S8_L001_R1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Ansuman Satpathy, Stanford

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JJCLT3
Lane
1
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
26851960

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: Homo sapiens (female) H9 differentiated cell specimen induced to cardiac muscle cell for 15 days; Homo sapiens (male) HepG2 cell line grown in DMEM without serum; ... and 10 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
tsv
cell hashing barcodes
cell hashing barcodes
Ansuman Satpathy, Stanford
290 KB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1449QGOT, IGVFFI2868HAWF, IGVFFI0150KOPI, IGVFFI1218FETB
Ansuman Satpathy, Stanford
1.3 KB
validated