IGVFFI0142BGUP

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0690DENM(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X049_G1_P065_L006_R1

md5sum

2cdd31d31510c2335c796c12a5a93ad6

Content MD5sum

47ff97e55ff3c9536368f670d06e3641

File Size

1.4 GB

Submitted File Name

Multiome_ATAC_X049_G1_L001_P065_S23_L006_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

47000055

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1209CUGB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 63 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; ... and 8 more samples