IGVFFI0132ZPKN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8225TLID(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP005_G8_P055_L001_R3

md5sum

ba465246082f1820f149f5459dbaa3e8

Content MD5sum

e0318a5875a59f6636f4356adfc7e908

File Size

1.6 GB

Submitted File Name

Multiome_ATAC_RP005_G8_L008_P055_S4_L001_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JGVLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

51806249

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5214FLGB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 72 years) posterior cingulate gyrus tissue associated with Parkinson's disease; Homo sapiens (female, 81 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples