IGVFFI0127IMJH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3830MHQW(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X040_G6_P041_L004_I1

md5sum

4fe8c706ffa898c54a753ad50cb54b41

Content MD5sum

d184f4ef14cef44c6e73e10726b7ad62

File Size

364 MB

Submitted File Name

Multiome_ATAC_X040_G6_L006_P041_S8_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

46746729

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM9187MAHV

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 83 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples