IGVFFI0126WZPN

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5508ONPS(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP014_G4_P061_L004_I1

md5sum

e52f065bc2ebc2aaa6857f60819c5a13

Content MD5sum

621e889b949acf506394589216a2e244

File Size

502 MB

Submitted File Name

Multiome_ATAC_RP014_G4_L004_P061_S12_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

66600283

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8048XYHR

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples