IGVFFI0125IBBM

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4249DVHL(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP010_G2_P057_L001_I1

md5sum

96ece113267398aab5d4d8a92c869d16

Content MD5sum

3eb4ffe8dddedef05ed1bdff0f682673

File Size

351 MB

Submitted File Name

Multiome_ATAC_RP010_G2_L002_P057_S18_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

44030614

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8981GXZB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) putamen tissue associated with Parkinson's disease, mild cognitive impairment; ... and 12 more samples