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IGVFFI0121XAZF

released
validated
File Set
IGVFDS5184IRRU(CRISPR base editing FlowFISH screen sorted on the expression of NFKBIA integrating a guide (sgRNA) library targeting phenotype-associated variants genome-wide associated with blood pressure)
Summary
R2 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
guillaume-lettre:BP_screen_ABE8_L_R4_1_read2
md5sum
f53b52d832fcd5b27466c53c5eba7005
Content MD5sum
59ea61ac0bfe7cb603966d2a9969746b
File Size
1.6 GB
Submitted File Name
/home/lokensin/projects/rrg-glettre/sequencing_datastore/raw_data/BE_IGVF_20230720/samples/NS.X0070.001.IndexR1_34.L_R4_1_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Guillaume Lettre, MHI

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Sequencing Kit
NovaSeq 6000 SP Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
151
Read Count
28881081

Samples

1 item
Accession
Type
Sample Terms
Summary
InVitroSystem
Homo sapiens (female) TeloHAEC cell line (sorting details: FACS 20-40% expression of NFKBIA) modified with CRISPR base editing SpRY-ABE8e, transduced (lentivirus) with a guide library

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
csv
guide quantifications
guide quantifications
Guillaume Lettre, MHI
425 KB
validated