IGVFFI0115YZGO

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0088WTOH(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP013_G5_P061_L003_R3

md5sum

570188af3ba6f75312865542df4e2358

Content MD5sum

3a363b0c4afee35315fbd9922135bbab

File Size

2.4 GB

Submitted File Name

Multiome_ATAC_RP013_G5_L005_P061_S5_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

78299883

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8342TFWF

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 14 more samples