IGVFFI0097JFYW

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1651XBZZ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X021_G3_P021_L001_R1

md5sum

ab4a318fadda2682123c6c756a0345be

Content MD5sum

f2907ba15fdd7ba049549a4b7b909d52

File Size

8.3 GB

Submitted File Name

Multiome_ATAC_X021_G3_L003_P021_S1_L001_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HV7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

270377872

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM4827HHEE

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 90 or above years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 70 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples