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IGVFFI0089JXZC

released
validated
File Set
IGVFDS7207IORB(single-nucleus RNA sequencing assay (10x multiome with MULTI-seq))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp17_rna_10x2_NGS1_r1
md5sum
c4fb6aa29723961064f5b231acd2c961
Content MD5sum
3406621ce1901777543909911bffb712
File Size
5.1 GB
Submitted File Name
/oak/stanford/groups/satpathy/users/backup/cmcg/igvf17/GEX/CMAS19_GEX2_S166_L005_R1_001.fastq.gz
Checkfiles Version
v14

Sequencing Details

Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
22NCYLLT3
Lane
5
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R1
Average Read Length
28
Read Count
274357527

Samples

1 item
Accession
Type
Sample Terms
Disease Terms
Summary
MultiplexedSample
multiplexed sample: RUES2 differentiated cell specimen induced to gastrula for 2 days, female, Homo sapiens; RUES2 differentiated cell specimen induced to gastrula for 1 day, female, Homo sapiens; ... and 10 more samples

Files Derived From This File

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
hdf5
raw feature barcode matrix
cell by gene in raw feature barcode matrix
Ansuman Satpathy, Stanford
166 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI0089JXZC, IGVFFI6483HCFF, IGVFFI5008FPTJ, IGVFFI5220EJPW
Ansuman Satpathy, Stanford
1.4 KB
validated

Attribution

Award
HG012076
Principal Investigator(s)
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford