IGVFFI0079YAMM

released

validated

File Set

IGVFDS1635IQIT(gRNA sequencing for mixed CRISPR FlowFISH screen integrating a guide (sgRNA) library targeting accessible genome regions in many genomic loci)

Summary

reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

jesse-engreitz:auxiliary_file_CRUDO_KITLG-Auxin0hrs-FF1-BinB-PCR3_S98

md5sum

17439f2d67cb9e29c43818a29a3aed1c

Content MD5sum

1de720006fe352b5c05685351c184bfc

File Size

40 MB

Submitted File Name

/oak/stanford/groups/engreitz/Projects/Cohesin/220104B013_Cohesin_KITLG/fastq_trim/Auxin0hrs-FF1-BinB-PCR3_S98_R1_001.fastq.gz

Sequencing Details

Sequencing Platform

Illumina HiSeq 2500

Sequencing Run

Index

CATGCTTA:ATTG

Average Read Length

Read Count

1694447

Samples

1 item

Accession

Type

Sample Terms

Summary

IGVFSM4469TBGW

InVitroSystem

HCT116

HCT116 cell line, male, Homo sapiens (sorting details: FACS bin B for 10-20% expression of KITLG) modified with CRISPRi Sp-dCas9-KOX1-KRAB, inactive AID system targeting RAD21, transfected with a guide library