IGVFFI0078PHVS

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8552LVZZ(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP009_G2_P057_L002_I1

md5sum

4fe85c6dcaf822f4cf6a7b0438297af6

Content MD5sum

ee1b5a3a28696d73cb8a32ab391af14f

File Size

321 MB

Submitted File Name

Multiome_ATAC_RP009_G2_L002_P057_S10_L002_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

43792492

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1206IWFU

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 70 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 75 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy; ... and 10 more samples