IGVFFI0074IRZF

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS0912BHEQ(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP030_G3_P077_L004_I1

md5sum

60997f9446c8e15d13e10cce50ee8027

Content MD5sum

b343b7c810116cdd1706b8f8995f2e97

File Size

464 MB

Submitted File Name

Multiome_ATAC_RP030_G3_L003_P077_S37_L004_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

22F3GTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

65683806

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3536QCVJ

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 78 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 6 more samples