IGVFFI0071WBEH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6990EDGJ(single-nucleus RNA sequencing assay (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X037_G4_P038_L002_I1

md5sum

67a46f8346240d3b7174e6e47e420e41

Content MD5sum

ac545d22f8b57d026e80e00c34070444

File Size

1.2 GB

Submitted File Name

Multiome_RNA_X037_G4_L004_P038_S10_L002_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

195936287

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8498PZUG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 81 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 81 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples