IGVFFI0066XSVK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS9516JWYR(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP002_G5_P051_L005_I1

md5sum

86c444a545bc8a5a4afdc888c817ceac

Content MD5sum

0b5f3a78ff58e8c6fe386835a9679582

File Size

489 MB

Submitted File Name

Multiome_ATAC_RP002_G5_L011_P051_S33_L005_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

68130006

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM5494QQKW

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples