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INDEXED
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SequenceFile
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IGVFFI0060PNZQ
IGVFFI0060PNZQ
released
validated
Json view
File Set
IGVFDS2108XESQ
(single-nucleus ATAC-seq (10x multiome with MULTI-seq))
Summary
I1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
ansuman-satpathy:igvf_exp9_atac_10x2_NGS2_i1
md5sum
7d34c97aba30c07293a50e301f0ba6fd
Content MD5sum
ea62d79cc42d6778be19c71857013e0d
File Size
2.7 GB
Submitted File Name
/oak/stanford/projects/igvf/Projects/230707_IGVF9_McGinnis/ATAC/FASTQ/ATAC_2CMAS_IGVF9_A_S22_L006_I1_001.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
223JGVLT3
Lane
6
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
I1
Average Read Length
8
Read Count
411263055
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM2512OHNK
MultiplexedSample
B cell
multiplexed sample: Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 1 day; Homo sapiens (male) B differentiated cell specimen induced to plasmablast for 5 days; ... and 5 more samples
Files Derived From This File
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI4907GYFZ
tsv
fragments
fragments
Ansuman Satpathy, Stanford
6.6 GB
validation exempted
Associated seqspec Files
1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
IGVFFI2789XFWJ
yaml
seqspec
seqspec of IGVFFI4991KQMH, IGVFFI0060PNZQ, IGVFFI2875ZLRI, IGVFFI5847LLGI
Ansuman Satpathy, Stanford
1.4 KB
validated
Attribution
Award
HG012076
Principal Investigator(s)
Ansuman Satpathy
Contact P.I.
Ansuman Satpathy
Lab
Ansuman Satpathy, Stanford