IGVFFI0057YVKB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7774XGTW(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X034_G4_P034_L002_R1

md5sum

ae38f85e121f09d590eb0e685791fb98

Content MD5sum

cc8b393788f85ef988ada72f1e2361be

File Size

14 GB

Submitted File Name

Multiome_RNA_X034_G4_L004_P034_S28_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H2WFTDSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

101

Read Count

215924304

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6584SYBT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 80 years) middle temporal gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 80 years) cerebellar cortex tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 10 more samples