IGVFFI0047BPAV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS1897GFNY(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X050_G4_P065_L008_R3

md5sum

81e9755bb1267d2bf5d467ba8ca24461

Content MD5sum

a44d224ca1659eba8430fc7ec37c3400

File Size

1.9 GB

Submitted File Name

Multiome_ATAC_X050_G4_L004_P065_S34_L008_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HC3LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

61771092

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7568QAEB

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 80 years) posterior cingulate gyrus tissue associated with Parkinson's disease, cerebral amyloid angiopathy, mild cognitive impairment; ... and 8 more samples