IGVFFI0044STGX

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8148USUN(single-nucleus RNA sequencing assay (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X042_G3_P044_L008_R2

md5sum

2bd537efd7b14f2aa4d0c59fc3e0bd75

Content MD5sum

abc2da3fc279a6d4eff5c493210cf6a5

File Size

2.6 GB

Submitted File Name

Multiome_RNA_X042_G3_L003_P044_S21_L008_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

222YMLLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

61377065

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3739CWYU

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 82 years) putamen tissue associated with Alzheimer disease, Parkinson's disease, cerebral amyloid angiopathy, multiple sclerosis; ... and 10 more samples