IGVFFI0041VSSI

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3379JUSL(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP001_G3_P051_L006_R3

md5sum

d7dceaf1db7abd72846f0f86c30e08ff

Content MD5sum

5a6927356b0c5e75285f249303a2ed30

File Size

2.3 GB

Submitted File Name

Multiome_ATAC_RP001_G3_L003_P051_S23_L006_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

77601788

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8767PGTT

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 10 more samples