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INDEXED
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SequenceFile
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IGVFFI0041KAXT
IGVFFI0041KAXT
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validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS5320BHIT
(single-nucleus ATAC-seq (10x multiome))
Summary
R3 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_ATAC_RP025_G4_P069_L002_R3
md5sum
ee88c79347c436412ebab8418b16bf66
Content MD5sum
f67df500e1890747965fe30182e419a5
File Size
13 GB
Submitted File Name
Multiome_ATAC_RP025_G4_L004_P069_S4_L002_R3_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq X
Sequencing Run
1
Flowcell ID
19RTCA4LE
Lane
2
Sequencing Kit
NovaSeq X Series 10B Reagent Kit
Illumina Read Type
R3
Average Read Length
150
Read Count
199383816
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5834DWZB
MultiplexedSample
posterior cingulate gyrus
,
putamen
,
substantia nigra
Alzheimer disease
,
cerebral amyloid angiopathy
,
Parkinson's disease
multiplexed sample: Homo sapiens (male, 79 years) posterior cingulate gyrus tissue; Homo sapiens (male, 81 years) putamen tissue; ... and 8 more samples