IGVFFI0036SALO

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/sequence-files/IGVFFI0036SALO/",
4    "@type": [
5        "SequenceFile",
6        "File",
7        "Item"
8    ],
9    "accession": "IGVFFI0036SALO",
10    "aliases": [
11        "tim-reddy:starr-seq-rna-fastq-k562-P009-R1"
12    ],
13    "assay_titles": [
14        "SUPERSTARR"
15    ],
16    "audit": {},
17    "award": {
18        "@id": "/awards/HG012053/",
19        "component": "functional characterization"
20    },
21    "checkfiles_version": "v14",
22    "content_md5sum": "8bca76dd1ab29dd9f7cb0dd340e6207b",
23    "content_type": "reads",
24    "controlled_access": false,
25    "creation_timestamp": "2025-02-06T04:02:56.953967+00:00",
26    "externally_hosted": false,
27    "file_format": "fastq",
28    "file_set": {
29        "@id": "/measurement-sets/IGVFDS3499EXHQ/",
30        "@type": [
31            "MeasurementSet",
32            "FileSet",
33            "Item"
34        ],
35        "accession": "IGVFDS3499EXHQ",
36        "assay_term": {
37            "@id": "/assay-terms/OBI_0002041/",
38            "term_name": "self-transcribing active regulatory region sequencing assay"
39        },
40        "file_set_type": "experimental data",
41        "samples": [
42            {
43                "@id": "/in-vitro-systems/IGVFSM3971AIBS/",
44                "@type": [
45                    "InVitroSystem",
46                    "Biosample",
47                    "Sample",
48                    "Item"
49                ],
50                "accession": "IGVFSM3971AIBS",
51                "classifications": [
52                    "cell line"
53                ],
54                "sample_terms": [
55                    {
56                        "@id": "/sample-terms/EFO_0002067/",
57                        "status": "released",
58                        "term_name": "K562"
59                    }
60                ],
61                "status": "released",
62                "summary": "Homo sapiens (female) K562 cell line transfected with a reporter library",
63                "taxa": "Homo sapiens"
64            }
65        ],
66        "status": "released",
67        "summary": "SUPERSTARR integrating a reporter library targeting random selections genome-wide"
68    },
69    "file_size": 5951162265,
70    "flowcell_id": "AAFHYKJM5",
71    "gene_list_for": [],
72    "href": "/sequence-files/IGVFFI0036SALO/@@download/IGVFFI0036SALO.fastq.gz",
73    "illumina_read_type": "R1",
74    "input_file_for": [
75        "/alignment-files/IGVFFI7373KSGO/",
76        "/alignment-files/IGVFFI2969FDGZ/"
77    ],
78    "integrated_in": [],
79    "lab": {
80        "@id": "/labs/tim-reddy/",
81        "title": "Tim Reddy, Duke"
82    },
83    "lane": 1,
84    "loci_list_for": [],
85    "maximum_read_length": 301,
86    "md5sum": "08ed7c96878ce4814e73ef1d9dfe2f5c",
87    "mean_read_length": 301,
88    "minimum_read_length": 301,
89    "quality_metrics": [],
90    "read_count": 47322269,
91    "read_names": [
92        "Read 1"
93    ],
94    "release_timestamp": "2025-04-09T16:39:48.625072+00:00",
95    "s3_uri": "s3://igvf-files/2025/02/06/8a6fa0c1-443d-4bd9-b5e2-b92d645b50cd/IGVFFI0036SALO.fastq.gz",
96    "schema_version": "15",
97    "seqspecs": [],
98    "sequencing_kit": "NextSeq 2000 P3 XLEAP-SBS Reagent Kit",
99    "sequencing_platform": {
100        "@id": "/platform-terms/EFO_0010963/",
101        "status": "released",
102        "term_name": "Illumina NextSeq 2000"
103    },
104    "sequencing_run": 1,
105    "status": "released",
106    "submitted_by": {
107        "@id": "/users/29f5f78d-ac90-421e-90c6-a90e1dc407a7/",
108        "title": "Alejandro Barrera"
109    },
110    "submitted_file_name": "/data/reddylab/Alex/IGVF/data_submissions/raw_data/AIM_1_STARR_seq/K562.starrseq.rna.pool9.R1.fastq.gz",
111    "summary": "R1 reads from sequencing run 1",
112    "upload_status": "validated",
113    "uuid": "8a6fa0c1-443d-4bd9-b5e2-b92d645b50cd"
114}