IGVFFI0036FQZE

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5184YEZB(single-nucleus ATAC-seq (10x multiome))

Summary

R2 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP014_G8_P061_L004_R2

md5sum

ecc176025d49d64ee3c355b4b611c74c

Content MD5sum

e2a3f25ce5c4dc66b34c978924328a0c

File Size

1.2 GB

Submitted File Name

Multiome_ATAC_RP014_G8_L008_P061_S16_L004_R2_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

68742401

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7659CCOT

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples