IGVFFI0034IVJK

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8288FNQQ(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP008_G4_P057_L002_R1

md5sum

87786bea3e5a94afd7b7afde96064c34

Content MD5sum

92e5c2698f167c1598f2c02ca4bdddbb

File Size

1.1 GB

Submitted File Name

Multiome_ATAC_RP008_G4_L004_P057_S4_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223HGTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

36278489

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM1461ETOM

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, multiple sclerosis, Parkinson's disease

multiplexed sample: Homo sapiens (male, 69 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (male, 79 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples