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INDEXED
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SequenceFile
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IGVFFI0031AYFA
IGVFFI0031AYFA
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validated
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This object is in preview status. Metadata is subject to change until this object is released.
File Set
IGVFDS7974SGAW
(single-nucleus RNA sequencing assay (10x multiome))
Summary
R1 reads from sequencing run 1
File Format
fastq
Content Type
reads
Aliases
igvf:corces_sequenceFile_RNA_X011_G8_P010_L002_R1
md5sum
ef53512d4422f6ff45026d6bb9dd1982
Content MD5sum
cffeaf80d4363399e254ba40cf39583a
File Size
3.7 GB
Submitted File Name
Multiome_RNA_X011_G8_L008_P010_S10_L002_R1_001.fastq.gz
Checkfiles Version
v20
Attribution
Ryan Corces, Gladstone Institute UCSF
(
HG012076
—
Ansuman Satpathy
)
Sequencing Details
Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
1
Flowcell ID
HJ7TNDSX5
Lane
2
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R1
Average Read Length
28
Read Count
174973272
Samples
1 item
Accession
Type
Sample Terms
Disease Terms
Summary
IGVFSM5882JKZW
MultiplexedSample
cerebellar cortex
,
middle temporal gyrus
,
posterior cingulate gyrus
,
putamen
,
substantia nigra
cerebral amyloid angiopathy
,
mild cognitive impairment
,
Parkinson's disease
multiplexed sample: Homo sapiens (female, 84 years) posterior cingulate gyrus tissue associated with Parkinson's disease, mild cognitive impairment; Homo sapiens (male, 81 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples