IGVFFI0023SPIH

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3112XAVR(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X043_G4_P043_L007_R3

md5sum

dde8f515b2b6e4cbf1da881ca810b66b

Content MD5sum

17bb536935afd609b1245df64aa1e41a

File Size

2.7 GB

Submitted File Name

Multiome_ATAC_X043_G4_L004_P043_S30_L007_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JJTLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

90192734

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6578YJBX

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 79 years) substantia nigra tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (male, 79 years) cerebellar cortex tissue associated with Alzheimer disease, Parkinson's disease; ... and 10 more samples