IGVFFI0022FFMB

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS8623RZCR(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X012_G1_P010_L002_R1

md5sum

c44732138e2a08fc19d301d7f0f02171

Content MD5sum

18f8e2dd5cdb5e0486f7beb925ef9ef2

File Size

4.2 GB

Submitted File Name

Multiome_RNA_X012_G1_L001_P010_S11_L002_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HJ7TNDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

195056837

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7268MVFI

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 74 years) putamen tissue; Homo sapiens (male, 72 years) substantia nigra tissue associated with Parkinson's disease; ... and 10 more samples