IGVFFI0017HQVJ

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS4194GPDU(single-nucleus ATAC-seq (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP033_G4_P079_L008_R1

md5sum

85cc39a48ecfaa039614193163fb4a9d

Content MD5sum

99fc627e9b9c7149d8ef4ebf97f9d569

File Size

3.1 GB

Submitted File Name

Multiome_ATAC_RP033_G4_L004_P079_S28_L008_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

19U7CA4LE

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

150

Read Count

49719277

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM3471ECAX

MultiplexedSample

posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, Parkinson's disease

multiplexed sample: Homo sapiens (male, 70 years) substantia nigra tissue associated with Parkinson's disease; Homo sapiens (female, 70 years) substantia nigra tissue associated with Parkinson's disease; ... and 6 more samples