IGVFFI0013FXJV

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS3610VOSK(single-nucleus RNA sequencing assay (10x multiome))

Summary

R1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_RNA_X017_G2_P016_L004_R1

md5sum

8635ffde874427e717491b110d33dc95

Content MD5sum

c03c06576637aca0dad76f8af69b6798

File Size

4.3 GB

Submitted File Name

Multiome_RNA_X017_G2_L002_P016_S10_L004_R1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

HTHCCDSX5

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

207272402

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM0604ZSIQ

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 86 years) middle temporal gyrus tissue associated with Parkinson's disease; Homo sapiens (male, 85 years) posterior cingulate gyrus tissue associated with Parkinson's disease; ... and 10 more samples