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IGVFFI0012VGXP

released
validated
File Set
IGVFDS4464LQXA(single-cell RNA sequencing assay (SHARE-seq))
Summary
R2 reads from sequencing run 172
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_172_R2
bradley-bernstein:SS-LS_2073_R2
buenrostro-bernstein:SS-LS_172_R2
buenrostro-bernstein:SS-LS_2073_R2
md5sum
fb9914a6e0f3f8eb9e4a18e9623cb1ee
Content MD5sum
786571201f5786eec0c2416d7067f460
File Size
1.0 GB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-202_L1_SS-PKR-131_2022-APRIL-R1-PLATE2-ENTIRE-PLATE_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
172
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
149
Read Count
21714608

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 131)

Files Derived From This File

2 items
tar
comprehensive gene count matrix
unfiltered cell by gene in comprehensive gene count matrix
Jason Buenrostro, Broad
2.2 GB
validated
h5ad
sparse gene count matrix
unfiltered cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
924 MB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI8569MXAP, IGVFFI0012VGXP
Jason Buenrostro, Broad
1.2 KB
validated