IGVFFI0006NWCC

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS5184YEZB(single-nucleus ATAC-seq (10x multiome))

Summary

R3 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP014_G8_P061_L003_R3

md5sum

5beac5e286bc33689fa2cd967372b8ba

Content MD5sum

bfc5100e2997234f98cd3f04bfd185ba

File Size

2.1 GB

Submitted File Name

Multiome_ATAC_RP014_G8_L008_P061_S16_L003_R3_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

2257VGLT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

69127218

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM7659CCOT

MultiplexedSample

middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 83 years) putamen tissue associated with Parkinson's disease, cerebral amyloid angiopathy; Homo sapiens (female, 78 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 14 more samples