IGVFFI0006LELT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS7688YQXY(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_X037_G4_P037_L001_I1

md5sum

0a697f420a355e929824f8ce07905a8c

Content MD5sum

ffaa3b07393072b8c66413e1e41a40e4

File Size

1.5 GB

Submitted File Name

Multiome_ATAC_X037_G4_L004_P037_S10_L001_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq 6000

Sequencing Run

Flowcell ID

H5VM5DSX7

Lane

Sequencing Kit

NovaSeq 6000 S4 Reagent Kit v1.5

Illumina Read Type

Average Read Length

Read Count

202503545

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM8498PZUG

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (female, 81 years) cerebellar cortex tissue associated with Parkinson's disease; Homo sapiens (male, 81 years) putamen tissue associated with Parkinson's disease; ... and 10 more samples