IGVFFI0005LIDT

preview

validated

This object is in preview status. Metadata is subject to change until this object is released.

File Set

IGVFDS6812JLHX(single-nucleus ATAC-seq (10x multiome))

Summary

I1 reads from sequencing run 1

File Format

fastq

Content Type

reads

Aliases

igvf:corces_sequenceFile_ATAC_RP002_G4_P051_L007_I1

md5sum

172e3cbf21f01c70dc216cd8338fd8a9

Content MD5sum

14a31a464480d0da4b580b8bb1b073e2

File Size

26 MB

Submitted File Name

Multiome_ATAC_RP002_G4_L004_P051_S32_L007_I1_001.fastq.gz

Checkfiles Version

v20

Attribution

Ryan Corces, Gladstone Institute UCSF

(

HG012076 — Ansuman Satpathy

)

Sequencing Details

Sequencing Platform

Illumina NovaSeq X

Sequencing Run

Flowcell ID

223JL2LT3

Lane

Sequencing Kit

NovaSeq X Series 10B Reagent Kit

Illumina Read Type

Average Read Length

Read Count

3000093

Samples

1 item

Accession

Type

Sample Terms

Disease Terms

Summary

IGVFSM6197WJXN

MultiplexedSample

cerebellar cortex, middle temporal gyrus, posterior cingulate gyrus, putamen, substantia nigra

Alzheimer disease, cerebral amyloid angiopathy, mild cognitive impairment, Parkinson's disease

multiplexed sample: Homo sapiens (male, 73 years) putamen tissue; Homo sapiens (male, 82 years) middle temporal gyrus tissue associated with Parkinson's disease; ... and 10 more samples