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IGVFFI0003RJLQ

released
validated
File Set
IGVFDS0020LQRY(single-cell ATAC-seq (SHARE-seq))
Summary
R2 reads from sequencing run 41
File Format
fastq
Content Type
reads
Aliases
bradley-bernstein:SS-LS_2003_R2
bradley-bernstein:SS-LS_41_R2
buenrostro-bernstein:SS-LS_2003_R2
buenrostro-bernstein:SS-LS_41_R2
md5sum
4da56b2ad865db033b9b0eb23d5137e9
Content MD5sum
3c46e400e9e3f4b427cc49fd5b7ce775
File Size
1.2 GB
Submitted File Name
gs://broad-epi-ss-lane-subsets/SS-CoPA-156_L1_SS-PKR-129_2022-APRIL-R1-PLATE2-ENTIRE-PLATE_R2.fastq.gz
Checkfiles Version
Legacy version of checkfiles
Attribution
Jason Buenrostro, Broad

Sequencing Details

Sequencing Platform
Illumina NovaSeq 6000
Sequencing Run
41
Sequencing Kit
NovaSeq 6000 S4 Reagent Kit v1.5
Illumina Read Type
R2
Average Read Length
149
Read Count
23285936

Samples

1 item
Accession
Type
Sample Terms
Summary
Tissue
Mus musculus C57BL/6 (female) brain tissue (cellular sub pool: SS-PKR 129)

Files Derived From This File

2 items
bed
fragments
GRCm39 unfiltered fragments
Jason Buenrostro, Broad
431 MB
validated
bam
alignments
GRCm39 unfiltered alignments
Jason Buenrostro, Broad
3.1 GB
validated

Associated seqspec Files

1 item
Accession
File Format
Content Type
Summary
Lab
File Size
Upload Status
yaml
seqspec
seqspec of IGVFFI1847DJVR, IGVFFI0003RJLQ
Jason Buenrostro, Broad
1.2 KB
validated