Home
Home
Search (⌘K or ⌃K)
Data
Methodology
Data Model
About
Help
Sign In
INDEXED
Home
/
Workflow
Workflow
Provenance
Quality
Clear All
Click and hold a term momentarily to select items
without
that term.
Software
All
None
Clear term filter
deseq2
5
samtools
3
anndata
1
bamtools
1
bowtie
1
bowtie2
1
bustools
1
bwa
1
cellranger
1
cooler
1
See all 23 terms
Analysis Step Types
All
None
quantification
6
alignment
3
filtering
3
signal generation
3
counts normalization
1
interaction calling
1
merging
1
peak calling
1
Output Types
All
None
fold change over control
3
alignments
2
bin paired count
1
contact matrix
1
differential chromatin contact quantifications
1
differential gene expression quantifications
1
filtered feature barcode matrix
1
guide quantifications
1
peak quantifications
1
raw feature barcode matrix
1
sparse gene count matrix
1
transcript quantifications
1
transcriptome alignments
1
Status
released
25 Items
100 Items
300 Items
8 items
Workflow
IGVFWF7562QXLM
Cell Ranger Gene Count Pipeline
External Lab, Community
released
Workflow
IGVFWF2849QJOS
Gersbach HiCAR Quantification Workflow
Charles Gersbach, Duke
released
Workflow
IGVFWF6241JYDF
UCI snRNA-seq workflow
Ali Mortazavi, UCI
released
Workflow
IGVFWF5701UESO
Gersbach Perturb-seq workflow
Charles Gersbach, Duke
released
Workflow
IGVFWF6411VZLF
Gersbach GGR ATAC-seq Pipeline
Charles Gersbach, Duke
released
Workflow
IGVFWF1709OHTV
nf-core HiCAR Pipeline
External Lab, Community
released
Workflow
IGVFWF8837BHJV
Gersbach FACS CRISPR screen workflow
Charles Gersbach, Duke
released
Workflow
IGVFWF6270QWBB
Gersbach GGR RNA-seq Pipeline
Charles Gersbach, Duke
released