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samples.@id
/multiplexed-samples/IGVFSM4547BFMA/
4 items
  • MeasurementSet
    IGVFDS3910GBDQ
    interference single-nucleus ATAC-seq (10x multiome with MULTI-seq)
    Ansuman Satpathy, Stanford
    Sample Summary
    multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples
    released
  • intermediate
    AnalysisSet
    IGVFDS2018URDY
    10x multiome with MULTI-seq: cell hashing barcodes, fragments, index, peaks, raw feature barcode matrix
    Ansuman Satpathy, Stanford
    Samples
    TeloHAEC, K562, Jurkat, THP-1 cell line and multiplexed sample, stimulated with treatment(s), modified with CRISPR modifications
    released
  • AuxiliarySet
    IGVFDS9295POCI
    lipid-conjugated oligo sequencing
    Ansuman Satpathy, Stanford
    Summary
    lipid-conjugated oligo sequencing for interference single-nucleus ATAC-seq (10x multiome with MULTI-seq), interference single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
    released
  • MeasurementSet
    IGVFDS2246RAZO
    interference single-nucleus RNA sequencing assay (10x multiome with MULTI-seq)
    Ansuman Satpathy, Stanford
    Sample Summary
    multiplexed sample: Jurkat cell line, male, Homo sapiens treated with 100 ng/mL phorbol 13-acetate 12-myristate for 4 hours, 5 μg/mL T-cell surface glycoprotein CD3 gamma chain for 4 hours; K562 cell line, female, Homo sapiens modified with CRISPRi Sp-dCas9-KOX1-KRAB; ... and 8 more samples
    released