Gersbach HiCAR Quantification Workflow

nf-core HiCAR Pipeline

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Charles Gersbach

High-Throughput Functional Annotation of Gene Regulatory Elements and Variants Critical to Complex Cellular Phenotypes

Charles Gersbach, Duke

Mus musculus HL-1 cell line, transfected with a guide library

Mus musculus C57BL/6J (female) HL-1 cell line transfected with a guide library

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HiCAR

CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus

HiCAR: bin paired count, differential chromatin contact quantifications

Accession

Aliases

Alternate Accessions

Assay Term

Assemblies

Assessed Genes

Associated Phenotypes

Award

Description

Donors

Taxa

File Set Type

Measured Mechanism

Input File Sets

Measurement Sets

Model Name

Prediction Objects

Preferred Assay Title

Protocols

Simplified Sample Summary

Samples

Prediction Scope

Selection Criteria

Sequencing Library Types

Genes

Status

Summary

Assay Targeted Genes

Transcriptome Annotations

UUID

FileSet

File Set

Sample

Files

Provenance

Quality

Object Type

Construct Library Data

Classification

File Type

File Format

Construct Library Design

Audit category: WARNING

Audit Category: Internal Action

Externally Hosted

samples.@id

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