UCI snRNA-seq workflow

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Ali Mortazavi

Center for Mouse Genomic Variation at Single Cell Resolution

8 cube mouse founder strains plate igvf_011 Subpool_9 with Gastrocnemius as the primary tissue and Cortex/Hippocampus as the genetically multiplexed tissue

Ali Mortazavi, UCI

Mus musculus multiplexed sample of gastrocnemius, left cerebral cortex, left hippocampal formation, right cerebral cortex, right hippocampal formation

multiplexed sample: Mus musculus NZO/H1LtJ (female, 69 days) gastrocnemius tissue; Mus musculus NZO/H1LtJ (male, 69 days) left hippocampal formation tissue; ... and 190 more samples

Parse SPLiT-seq: sparse gene count matrix

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Assessed Genes

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Description

Donors

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File Set Type

Measured Mechanism

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Measurement Sets

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Prediction Objects

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Simplified Sample Summary

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Sample Institutional Certificates

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Selection Criteria

Sequencing Library Types

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Summary

Assay Targeted Genes

Transcriptome Annotations

UUID

Object Type

Classification

Sample

File Type

File Format

Data Use Limitation

Audit Category: Internal Action

input_file_sets.@id

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