UCI snRNA-seq workflow

audit_sample_missing_publication

audit_analysis_set_multiplexed_samples

audit_file_set_missing_publication

audit_ntr_term_id

audit_file_no_file_format_specifications

Ali Mortazavi

Center for Mouse Genomic Variation at Single Cell Resolution

Lab processed snRNA-seq gene counts with clusters and cell type annotations for IGVF C57BL/6J and Castaneus left cortex bridge samples

Ali Mortazavi, UCI

Mus musculus multiplexed sample of left cerebral cortex

multiplexed sample: Mus musculus CAST/EiJ (female, 72 days) left cerebral cortex tissue; Mus musculus C57BL/6J (male, 72 days) left cerebral cortex tissue; ... and 6 more samples

Parse SPLiT-seq: sparse gene count matrix

Accession

Aliases

Alternate Accessions

Assay Term

Assemblies

Assessed Genes

Associated Phenotypes

Award

Description

Donors

Taxa

File Set Type

Measured Mechanism

Input File Sets

Measurement Sets

Model Name

Prediction Objects

Preferred Assay Title

Protocols

Simplified Sample Summary

Samples

Prediction Scope

Selection Criteria

Sequencing Library Types

Genes

Status

Summary

Assay Targeted Genes

Transcriptome Annotations

UUID

FileSet

File Set

Sample

Files

Provenance

Quality

Object Type

Classification

File Type

File Format

Audit category: NOT COMPLIANT

Audit Category: Internal Action

input_file_sets.@id

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