Gersbach HiCAR Quantification Workflow

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Charles Gersbach

High-Throughput Functional Annotation of Gene Regulatory Elements and Variants Critical to Complex Cellular Phenotypes

differential chromatin contact quantifications

Charles Gersbach, Duke

Homo sapiens GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell, at 42 day(s) post change, perturbed with 1 μM Endothelin-1 for 3 days, transfected with a guide library

Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days treated with 1 μM Endothelin-1 for 3 days, transduced (lentivirus) with a guide library

Treatment of 1 μM Endothelin-1 for 3 days

CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus and a non-targeting guide (sgRNA) library

Homo sapiens (male) GM25256 (WTC-11) differentiated cell specimen induced to cardiac muscle cell for 42 days transduced (lentivirus) with a guide library

CRISPR HiCAR integrating a guide (sgRNA) library targeting accessible genome regions in a genomic locus

Accession

Aliases

Alternate Accessions

Assay Term

Assemblies

Assessed Genes

Associated Phenotypes Name

Award

Controlled Access

Data Use Limitation Summaries

Description

Donors

Taxa

File Set Type

File Type

Measured Mechanism

Input File Sets

Measurement Sets

Model Name

Prediction Objects

Preferred Assay Title

Protocols

Simplified Sample Summary

Samples

Sample Institutional Certificates

Sample Summary

Prediction Scope

Selection Criteria

Sequencing Library Types

Genes

Status

Summary

Assay Targeted Genes

Transcriptome Annotations

UUID

Object Type

Construct Library Data

Classification

Sample

Cellular Transformation Target

Treatment

File Format

Construct Library Design

Data Use Limitation

Release Date

Creation Date

Audit Category: Internal Action

input_file_sets.@id

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