MPRAnalyze Variant Annotation

Jay Shendure

Massively parallel characterization of variants and elements impacting transcriptional regulation in dynamic cellular systems

Nadav Ahituv, UCSF

Homo sapiens H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron, at 7 day(s) post change, transfected with a reporter library

Homo sapiens (male) H1-hESC pooled differentiated cell specimen induced to glutamatergic neuron for 7 days transduced (lentivirus) with a reporter library

lentiMPRA integrating a reporter library targeting histone modifications, transcription start sites, phenotype-associated variants genome-wide associated with autism spectrum disorder

Accession

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Alternate Accessions

Assay Term

Assemblies

Assessed Genes

Associated Phenotypes

Award

Controlled Access

Data Use Limitation Summaries

Description

Donors

Taxa

File Set Type

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Measured Mechanism

Input File Sets

Measurement Sets

Model Name

Prediction Objects

Preferred Assay Title

Protocols

Simplified Sample Summary

Samples

Sample Institutional Certificates

Sample Summary

Prediction Scope

Selection Criteria

Sequencing Library Types

Genes

Status

Summary

Assay Targeted Genes

Transcriptome Annotations

UUID

Object Type

Construct Library Data

Classification

Sample

Cellular Transformation Target

File Format

Construct Library Design

Data Use Limitation

input_file_sets.@id

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