IGVF

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Content Type

reads
66
MPRA sequence designs
1
barcode to element mapping
1

File Format

fastq
66
tsv
2

Sequencing Platform

Illumina NextSeq 500
36
Illumina NextSeq 550
18
Illumina NextSeq 2000
12

/tabular-files/IGVFFI2410QRVN/

68 items

SequenceFile
IGVFFI6788ZQNQ
fastq - reads - R2
Jay Shendure, UW
File Set
circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI1600RJDS
fastq - reads - R2
Jay Shendure, UW
File Set
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI3401EQXB
fastq - reads - I1
Jay Shendure, UW
File Set
circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI1686OVUP
fastq - reads - R1
Jay Shendure, UW
File Set
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI3651MDUX
fastq - reads - I1
Jay Shendure, UW
File Set
circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI3291LCGQ
fastq - reads - R2
Jay Shendure, UW
File Set
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI6784ZGTO
fastq - reads - R1
Jay Shendure, UW
File Set
quantification DNA barcode sequencing for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI3190GFNQ
fastq - reads - R2
Jay Shendure, UW
File Set
circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI0877RZRS
fastq - reads - I1
Jay Shendure, UW
File Set
quantification DNA barcode sequencing for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI4491NUDX
fastq - reads - I1
Jay Shendure, UW
File Set
quantification DNA barcode sequencing for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI6792VTXO
fastq - reads - R1
Jay Shendure, UW
File Set
quantification DNA barcode sequencing for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI7146AHOJ
fastq - reads - I1
Jay Shendure, UW
File Set
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI0540MIWO
fastq - reads - R1
Jay Shendure, UW
File Set
circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI4402ZZGL
fastq - reads - R2
Jay Shendure, UW
File Set
quantification DNA barcode sequencing for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI8975CBOT
fastq - reads - R2
Jay Shendure, UW
File Set
circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI4895ARWD
fastq - reads - R1
Jay Shendure, UW
File Set
quantification DNA barcode sequencing for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI2544WJNK
fastq - reads - R1
Jay Shendure, UW
File Set
quantification DNA barcode sequencing for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI1381WCIP
fastq - reads - R2
Jay Shendure, UW
File Set
circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI5640PFLS
fastq - reads - I1
Jay Shendure, UW
File Set
circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI2788CBCZ
fastq - reads - I1
Jay Shendure, UW
File Set
quantification DNA barcode sequencing for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI7403YFYV
fastq - reads - R1
Jay Shendure, UW
File Set
circularized RNA barcode detection for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI6324ZKKJ
fastq - reads - I1
Jay Shendure, UW
File Set
quantification DNA barcode sequencing for MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI4207ACZX
fastq - reads - R2
Jay Shendure, UW
File Set
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI8739CFNW
fastq - reads - I1
Jay Shendure, UW
File Set
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated
SequenceFile
IGVFFI9326QSUU
fastq - reads - R2
Jay Shendure, UW
File Set
MPRA (scQer) integrating a reporter library targeting accessible genome regions in many genomic loci
released
validated