IGVF

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/analysis-sets/IGVFDS7496XAWN/

6 items

AlignmentFile
IGVFFI4920WSOC
bam - unfiltered alignments - GRCm39
Jason Buenrostro, Broad
Content Summary
unfiltered alignments
AnalysisSe
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
released
validated
IndexFile
IGVFFI4013LHFQ
index of IGVFFI5731CAQI
Jason Buenrostro, Broad
AnalysisSe
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
released
validated
MatrixFile
IGVFFI0500LLBC
h5ad - cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
released
validated
IndexFile
IGVFFI6499QFAF
index of IGVFFI4920WSOC
Jason Buenrostro, Broad
AnalysisSe
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
released
validated
MatrixFile
IGVFFI4789LYNE
tar - cell by gene in kallisto single cell RNAseq output
Jason Buenrostro, Broad
Content Summary
cell by gene in kallisto single cell RNAseq output
AnalysisSe
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
released
validated
TabularFile
IGVFFI5731CAQI
bed - fragments - GRCm39
Jason Buenrostro, Broad
AnalysisSe
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
released
validated