IGVF

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/analysis-sets/IGVFDS2240UYEO/

6 items

MatrixFile
IGVFFI0400PXGY
h5ad - cell by gene in sparse gene count matrix
Jason Buenrostro, Broad
Content Summary
cell by gene in sparse gene count matrix
AnalysisSe
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
released
validated
IndexFile
IGVFFI6683SXWI
index of IGVFFI4618HJLC
Jason Buenrostro, Broad
AnalysisSe
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
released
validated
TabularFile
IGVFFI0753YWZB
bed - fragments - GRCm39
Jason Buenrostro, Broad
AnalysisSe
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
released
validated
AlignmentFile
IGVFFI4618HJLC
bam - unfiltered alignments - GRCm39
Jason Buenrostro, Broad
Content Summary
unfiltered alignments
AnalysisSe
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
released
validated
IndexFile
IGVFFI3726QQNT
index of IGVFFI0753YWZB
Jason Buenrostro, Broad
AnalysisSe
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
released
validated
MatrixFile
IGVFFI8130LOBS
tar - cell by gene in kallisto single cell RNAseq output
Jason Buenrostro, Broad
Content Summary
cell by gene in kallisto single cell RNAseq output
AnalysisSe
single-cell ATAC-seq (SHARE-seq), single-cell RNA sequencing assay (SHARE-seq)
released
validated