Home

IGVFFI9573KOZR

released
validated
File Set
IGVFDS0280IQAI(Homo sapiens GRCh38 GENCODE 43 genome)
Summary
GENCODE 43 transcriptome reference
File Format
gtf
Content Type
transcriptome reference
md5sum
230008ce6a9bbc0320ac3b7d7e8fbf23
Content MD5sum
3ecd873ce2d947156226bfcf3509e5e0
File Size
56 MB
Submitted File Name
IGVFFI7217ZMJZ_updated_chromosome_names.gtf.gz
Checkfiles Version
v19
Submitter Comment
This file was generated using the script https://github.com/IGVF/atomic-workflows/blob/main/src/notebooks/convert_gtf_chromosome_names.py from IGVFFI5842FWGQ. The notebook contains all the steps necessary to convert the chromosome names in gencode gtf file to ucsc-style chromosome names, as used in genome reference fasta file
Attribution
External Lab, Community

Reference Source Details

Transcriptome Annotation
GENCODE 43

Files This File Derives From

1 item
Accession
File Set
File Format
Content Type
Lab
File Size
Upload Status
gtf
transcriptome reference
External Lab, Community
53 MB
validated

Files Derived From This File

3 items
fasta
transcriptome reference
GRCh38 GENCODE 43 transcriptome reference
External Lab, Community
63 MB
validated
fasta
transcriptome reference
GRCh38 GENCODE 43 transcriptome reference
External Lab, Community
573 MB
validated
tar
transcriptome index
GRCh38 GENCODE 43 transcriptome index
External Lab, Community
2.5 GB
validated