IGVFFI9573KOZR

released
validated
1{
2    "@context": "/terms/",
3    "@id": "/reference-files/IGVFFI9573KOZR/",
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13            {
14                "category": "mismatched status",
15                "detail": "Released reference file [IGVFFI9573KOZR](/reference-files/IGVFFI9573KOZR/) has in progress subobject document [ef8955ae-8297-49ca-a210-6d339e3deb0f](/documents/ef8955ae-8297-49ca-a210-6d339e3deb0f/).",
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27    "content_md5sum": "3ecd873ce2d947156226bfcf3509e5e0",
28    "content_type": "transcriptome reference",
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30    "creation_timestamp": "2025-03-17T23:05:45.530764+00:00",
31    "derived_from": [
32        "/reference-files/IGVFFI7217ZMJZ/"
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38    "file_format": "gtf",
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43            "FileSet",
44            "Item"
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46        "accession": "IGVFDS0280IQAI",
47        "file_set_type": "genome",
48        "status": "released",
49        "summary": "Homo sapiens GRCh38 GENCODE 43 genome",
50        "taxa": "Homo sapiens"
51    },
52    "file_size": 56391934,
53    "gene_list_for": [],
54    "href": "/reference-files/IGVFFI9573KOZR/@@download/IGVFFI9573KOZR.gtf.gz",
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56        "/reference-files/IGVFFI9561BASO/",
57        "/reference-files/IGVFFI8853NLMY/",
58        "/reference-files/IGVFFI7399RDTR/"
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60    "integrated_in": [],
61    "lab": {
62        "@id": "/labs/community/",
63        "title": "External Lab, Community"
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66    "md5sum": "230008ce6a9bbc0320ac3b7d7e8fbf23",
67    "notes": "Generated using https://github.com/IGVF/atomic-workflows/blob/main/src/notebooks/convert_gtf_chromosome_names.py",
68    "quality_metrics": [],
69    "release_timestamp": "2025-03-31T16:58:58.240522+00:00",
70    "s3_uri": "s3://igvf-files/2025/03/17/3632d8a1-1c1c-40ce-afd2-b6dd340d8aac/IGVFFI9573KOZR.gtf.gz",
71    "schema_version": "18",
72    "status": "released",
73    "submitted_by": {
74        "@id": "/users/6bae687f-b77a-46b9-af0e-a02c135cf42e/",
75        "title": "Meenakshi Kagda"
76    },
77    "submitted_file_name": "IGVFFI7217ZMJZ_updated_chromosome_names.gtf.gz",
78    "submitter_comment": "This file was generated using the script https://github.com/IGVF/atomic-workflows/blob/main/src/notebooks/convert_gtf_chromosome_names.py from IGVFFI5842FWGQ. The notebook contains all the steps necessary to convert the chromosome names in gencode gtf file to ucsc-style chromosome names, as used in genome reference fasta file",
79    "summary": "GENCODE 43 transcriptome reference",
80    "transcriptome_annotation": "GENCODE 43",
81    "upload_status": "validated",
82    "uuid": "3632d8a1-1c1c-40ce-afd2-b6dd340d8aac"
83}