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ID
Lab
Status
Title
Version
/software-versions/bedtools-v2.26.0/
/labs/community/
released
BEDTools
v2.26.0
/software-versions/cellranger-v6.0.0/
/labs/community/
released
Cell Ranger
v6.0.0
/software-versions/sceptre-v0.9.2/
/labs/community/
released
Sceptre
v0.9.2
/software-versions/kb-python-v0.28.2/
/labs/lior-pachter/
released
kb-python
v0.28.2
/software-versions/umi-gene-perCell-plot-v3.0.0/
/labs/jason-buenrostro/
released
SHARE-seq alignmentV2 UMI_gene_perCell_plot
v3.0.0
/software-versions/bluestarr-v0.1.0/
/labs/andrew-allen/
released
BlueSTARR
v0.1.0
/software-versions/shendure-bulk-scqer-scripts-v1.0.0/
/labs/jay-shendure/
released
Shendure bulk scQer MPRA scripts
v1.0.0
/software-versions/deMULTIplex2-v1.0.2/
/labs/community/
released
deMULTIplex2
v1.0.2
/software-versions/mageck-v0.5.9.5/
/labs/community/
released
MAGeCK
v0.5.9.5
/software-versions/pairtools-v0.3.0/
/labs/community/
released
pairtools
v0.3.0
/software-versions/crispr-bean-v1.2.8/
/labs/luca-pinello/
released
CRISPR BEAN
v1.2.8
/software-versions/bamtools-v2.2.3/
/labs/community/
released
BamTools
v2.2.3
/software-versions/samtools-v1.21.0/
/labs/community/
released
Samtools
v1.21.0
/software-versions/mpraflow-assignment-script-v2.3.5/
/labs/jay-shendure/
released
MPRAflow assignment scripts
v2.3.5
/software-versions/gnu-parallel-v20161222.0.0/
/labs/community/
released
GNU parallel
v20161222.0.0
/software-versions/macs-v2.1.0/
/labs/community/
released
MACS
v2.1.0
/software-versions/samtools-v1.3.0/
/labs/community/
released
Samtools
v1.3.0
/software-versions/bowtie2-v2.3.5/
/labs/community/
released
Bowtie 2
v2.3.5
/software-versions/shendure-scqer-scripts-v1.0.0/
/labs/jay-shendure/
released
Shendure scQer MPRA scripts
v1.0.0
/software-versions/pairsqc-v0.2.3/
/labs/community/
released
pairsqc
v0.2.3
/software-versions/deseq2-v1.36.0/
/labs/community/
released
DESeq2
v1.36.0
/software-versions/tabix-v1.10.2/
/labs/community/
released
tabix
v1.10.2
/software-versions/pandas-v2.2.2/
/labs/community/
released
pandas
v2.2.2
/software-versions/fastqc-v0.11.9/
/labs/community/
released
FastQC
v0.11.9
/software-versions/bowtie2-v2.5.4/
/labs/community/
released
Bowtie 2
v2.5.4